PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_02.0001000347
Common NameOt02g07750, OT_ostta02g05530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 554aa    MW: 60848.9 Da    PI: 6.7001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_02.0001000347genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-054164123
                                     EEETTTTEEESSHHHHHHHHHH.T CS
                          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                     ++Cp+C ++F++ + L+ H  + H
  fgenesh1_pg.C_Chr_02.0001000347 41 HQCPHCERTFKQLDRLRMHVARqH 64
                                     79*****************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.9124165IPR007087Zinc finger, C2H2
SMARTSM003550.0074164IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804364IPR007087Zinc finger, C2H2
SuperFamilySSF544951.51E-8438536IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.106.4E-7438537IPR016135Ubiquitin-conjugating enzyme/RWD-like
PfamPF057735.0E-7440536IPR006575RWD domain
PROSITE profilePS509089.604444544IPR006575RWD domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MAPSNAQKKA LAKAKRGIVS TGAMSSKSGF DQAALQQNRD HQCPHCERTF KQLDRLRMHV  60
ARQHADVGGE ETSSAATVQG GLDGVKKGKA ALIIAEREKL KERARLERES DPTAKPNAPT  120
PFSRMSCKLP SVILREFVQK QKEFKSPRFR AKEESAENGG GWTCKVVLAD KHKPDKDKVF  180
FWKEKCETKE EAEHRVAVVA LAKIANSLPL QRLLPTEYKS TFVECERLEA KRLEDAKNHA  240
AREEQRIARM KSASKREVVQ VLTMSEEKRT LVETLLKEDY VMVSSADDDG ADEDEEGGVN  300
ELCEKLESLG FVREDALAAS KATKSTLESA LDPAISWLCV HVPESRLPAL YAPKLLNDGG  360
VVLLSKPTAS TSSASADARP TNPTTAWLWE RGYDQKSCED AVSEHSGRED ALAHLFGRVL  420
AKVSTEHASW PKGDPNFNEE EWNEELMAIE AICGEEKVSR IQGGGVRVNV DTEVGIGGTL  480
EVYLPKGGGY PCVEPPIIAY HAHGESREAF MRATRELARI AVENCGAPCV YTLIDAAPGL  540
VKFETRGDVK GASK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003075376.10.0mRNA splicing factor ATP-dependent RNA helicase (ISS)
TrEMBLQ01DF30.0Q01DF3_
STRINGQ01DF30.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1323122
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]